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- Fix deploy script to handle non-git directories by cloning to temp location and moving contents, preserving .env files during clone - Remove comment lines from env.j2 template to prevent xargs errors - Add initial deploy task to app_setup role to ensure app is deployed before service starts - Fix migrate command precedence to check env-specific overrides first - Add sudo to systemctl restart commands in deploy script - Update documentation with project-specific configuration notes These changes improve deployment reliability for all app projects while adding support for mirrormatch-specific requirements (db:push, seeding). All changes are backward-compatible with existing projects (pote, punimTag).